Information about the included subcortical atlases

aseg subcortex (FreeSurfer)

Reference: Fischl et al. Neuron (2002).

Atlas name keyword: aseg_subcortex

Region names: accumbens, amygdala, caudate, hippocampus, pallidum, putamen, thalamus

Melbourne Subcortex Atlas (S1)

Reference: Tian et al. Nature Neuroscience (2020).

Atlas name keyword: Melbourne_S1

Region names: accumbens, amygdala, caudate, hippocampus, pallidum, putamen, thalamus_anterior, thalamus_posterior

Melbourne Subcortex Atlas (S2)

Reference: Tian et al. Nature Neuroscience (2020).

Atlas name keyword: Melbourne_S2

Region names: accumbens_core, accumbens_shell, amygdala_lateral, amygdala_medial, caudate_anterior, caudate_posterior, hippocampus_anterior, hippocampus_posterior, pallidum_anterior, pallidum_posterior, putamen_anterior, putamen_posterior, thalamus_DA, thalamus_DP, thalamus_VA, thalamus_VP

Melbourne Subcortex Atlas (S3)

Reference: Tian et al. Nature Neuroscience (2020).

Atlas name keyword: Melbourne_S3

Region names: accumbens_core, accumbens_shell, amygdala_lateral, amygdala_medial, caudate_anterior, caudate_posterior, hippocampus_anterior, hippocampus_posterior, pallidum_anterior, pallidum_posterior, putamen_anterior, putamen_posterior, thalamus_DA, thalamus_DP, thalamus_VA, thalamus_VP

Melbourne Subcortex Atlas (S4)

Reference: Tian et al. Nature Neuroscience (2020).

Atlas name keyword: Melbourne_S4

Region names: accumbens_core, accumbens_shell, amygdala_lateral, amygdala_medial, caudate_anterior, caudate_posterior, hippocampus_anterior, hippocampus_posterior, pallidum_anterior, pallidum_posterior, putamen_anterior, putamen_posterior, thalamus_DA, thalamus_DP, thalamus_VA, thalamus_VP

AICHA subcortical atlas

Reference: Joliot et al. J Neurosci Methods (2015).

Atlas name keyword: AICHA_subcortex

Region names: Amygdala-1, Caudate-1, Caudate-2, Caudate-3, Caudate-4, Caudate-5, Caudate-6, Caudate-7, Pallidum-1, Putamen-2, Putamen-3, Thalamus-1, Thalamus-2, Thalamus-3, Thalamus-4, Thalamus-5, Thalamus-6, Thalamus-7, Thalamus-8, Thalamus-9

Brainnetome subcortical atlas

Reference: Fan et al. Cerebral Cortex (2016).

Atlas name keyword: Brainnetome_subcortex

Region names: GP, NAC, Otha, PPtha, Stha, cHipp, cTtha, dCa, dlPu, lAmyg, lPFtha, mAmyg, mPFtha, mPMtha, rHipp, rTtha, vCa, vmPu

CIT168 subcortical atlas

Reference: Pauli et al. Scientific Data (2018).

Atlas name keyword: CIT168_subcortex

Region names: Pu, Ca, NAC, EXA, GPe, GPi, SNc_PBP_VTA, RN, SNr, VeP, HN, HTH, MN, STH

Thalamus Nuclei (HCP) atlas

Reference: Najdenovska et al. Scientific Data (2018).

Atlas name keyword: Thalamus_HCP

Region names: Anterior, Central_Lateral-Lateral_Posterior-Medial_Pulvinar, Medio_Dorsal, Pulvinar, Ventral_Anterior, Ventral_Latero_Dorsal, Ventral_Latero_Ventral

Thalamus Nuclei (THOMAS) atlas

Reference: Su et al. NeuroImage (2019)

Atlas name keyword: Thalamus_THOMAS

Region names: AV, VA, VLa, VLp, VPl, Pul, LGN, MGN, CM, MD, Hb

Brainstem Navigator atlas

Reference: Biancardi et al. Brain Connectivity (2015)

Region names: CLi_RLi, CnF, DR, IC, ION, LC, LDTg_CGPn, LPB, MiTg_PBG, MnR, MPB, PAG, PCRtA, PMnR, PnO_PnC, PTg, RMg, RN1, RN2, ROb, RPa, SC, SN1, SN2, SOC, SubC, Ve, VSM, VTA_PBP, iMRtl, iMRtm, isRt, mRta, mRtd, mRtl, sMRtl, sMRtm

SUIT cerebellar atlas

Reference: Diedrichson. NeuroImage (2006).

Atlas name keyword: SUIT_cerebellar_lobule

Region names: I_IV, V, VI, VI_vermis, Crus_I, Crus_II, Crus_II_vermis, VIIb, VIIb_vermis, VIIIa, VIIIa_vermis, VIIIb, VIIIb_vermis, IX, IX_vermis, X, X_vermis